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--- public:ba-themen [2025/06/03 13:42] – tran
+++ public:ba-themen [2025/12/09 13:53] (current) – Added another POTTR related topic schulte
@@ Line 13: / Line 13: @@
   * Integrate/Implement CP ILP Formulations as a stand-alone application that processes MIDI or as a plugin for the scorewrite software MuseScore (Tanaka) Contact: Philipp
   * Paper Dominik Heider https://www.sciencedirect.com/science/article/pii/S0010482524002695 do that with LOBICO (categorical classification, not binary)
-  * https://www.sciencedirect.com/science/article/abs/pii/S0305054825000589 Implementierung eines "verbesserten" Algorithmus für Maximium Diversity, evtl. mit der 3-Phase-Search verknüpfbar. Contact: Khoa
+  * Changing the calculation of a drug response metric for a pharmacodynamic dose-time-response model. Contact: Khoa
+  * Removing tautomers and mesomers in generated chemical structures. Contact: Khoa
+  * Clustering of tumor trees with POTTR / based on POTTR. Contact: Sara
+  * Find maximal common trajectories in conflict graph using heuristics for max independent set. Contact: Sara
 === MSc level ===
+  * Development and implementation of a multi-grid Alignment Algorithm leveraging structure-adapted banded alignments. Contact: Martin
+  * Test and develop approximation algorithm for finding maximum / maximal common trajectories, probably combine it with an optimization after finding approx. solution. Contact: Sara
   * Vehicle routing problem for leaf optimization. Get Martin's code to run. Produce better pictures for Daan. Make modifications to speed up. Check if the model is good enough, adapt, ... Contact: Gunnar
   * Data from Olga. compare molecular graphs. Contact: Gunnar
   * Further stuff Nan (new stuff on image analysis)
+=== Projektarbeit ===
+  * Extend PHI (https://doi.org/10.1101/2024.10.27.620212) to work with diploid organisms
+  * Histo-Slide stitching via partial differential equations - Image-Puzzling for tissue samples. Contact: Martin
 === Other topics / No fixed level ===
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   * Spa-Typing and Flight Data: Collect Flight Data and Samples from Spa Database and look for Correlations (Check if a high volume of flights correlates to similar detected Spa-Types / Develop a framework to check correlation between flight volume and genetic information), Build on Ninas work, Contact: Philipp
   * Backport Sven's 0-Edge-CE-Heuristic into Yoshiko Main (and thus Cytoscape App), Contact: Sven, (Philipp?)
-  * Projektarbeit, very unclear outcome: https://newatlas.com/massive-attack-dna-spray-paint/56881/ Decode Sequence Massive Attack